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Number of items: 40.

Parkes, Ronald John, Brock, Fiona, Banning, Natasha C., Hornibrook, Edward R. C., Roussel, Erwan George Philippe, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher 2012. Changes in methanogenic substrate utilization and communities with depth in a salt-marsh, creek sediment in southern England. Estuarine, Coastal and Shelf Science 96 (1) , pp. 170-178. 10.1016/j.ecss.2011.10.025

Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Cragg, Barry Andrew, Gorra, Roberta, Knab, Nina J., Green, Christopher J., Mathes, Falko ORCID: https://orcid.org/0000-0002-2905-5190, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 2011. Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark under heterotrophic conditions. FEMS Microbiology Ecology 77 (2) , pp. 248-263. 10.1111/j.1574-6941.2011.01109.x

Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Rinna, Joachim, Roussel, Erwan Georges Philippe, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 2010. Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing. FEMS Microbiology Ecology 72 (2) , pp. 179-197. 10.1111/j.1574-6941.2010.00848.x

Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Blazejak, Anna, Cragg, Barry Andrew, Schippers, Axel, Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Tang, Xiaohong, Mathes, Falko ORCID: https://orcid.org/0000-0002-2905-5190, Ferdelman, Timothy G., Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 2009. Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307). Environmental Microbiology 11 (1) , pp. 239-257. 10.1111/j.1462-2920.2008.01759.x
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Fry, John Christopher, Horsfield, Brian, Sykes, Richard, Cragg, Barry A., Heywood, Chloe, Kim, Gwang Tae, Mangelsdorf, Kai, Mildenhall, Dallas C., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Vieth, Andrea, Zink, Klaus G., Sass, Henrik ORCID: https://orcid.org/0000-0001-8740-4224, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 2009. Prokaryotic populations and activities in an interbedded coal deposit, including a previously deeply buried section (1.6–2.3 km) above ∼ 150 Ma basement rock. Geomicrobiology Journal 26 (3) , pp. 163-178. 10.1080/01490450902724832

O'Sullivan, Louise Anne, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Fry, John Christopher, Parkes, Ronald John and Weightman, Andrew ORCID: https://orcid.org/0000-0002-6671-2209 2008. Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments. Journal of Microbiological Methods 75 (3) , pp. 579-581. 10.1016/j.mimet.2008.08.006

Fry, John Christopher, Parkes, Ronald John, Cragg, Barry Andrew, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835 2008. Prokaryotic biodiversity and activity in the deep subseafloor biosphere. FEMS Microbiology Ecology 66 (2) , pp. 181-196. 10.1111/j.1574-6941.2008.00566.x

O'Sullivan, L. A., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Fry, John Christopher, Parkes, Ronald John and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2008. Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments. Journal of Microbiological Methods 75 (3) , pp. 579-581. 10.1016/j.mimet.2008.08.006

Parkes, Ronald John, Cragg, Barry Andrew, Banning, Natasha C., Brock, Fiona, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Fry, John Christopher, Hornibrook, Ed, Pancost, Richard D., Kelly, Sam, Knab, Nina, Jørgensen, Bo B., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453 and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2007. Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark). Environmental Microbiology 9 (5) , pp. 1146-1161. 10.1111/j.1462-2920.2006.01237.x

Fry, John Christopher, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry Andrew, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 2006. Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiology Ecology 58 (1) , pp. 86-98. 10.1111/j.1574-6941.2006.00144.x
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Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Parkes, Ronald John, Cragg, Barry Andrew, Newberry, C. J., Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher 2006. Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiology Ecology 58 (1) , pp. 65-85. 10.1111/j.1574-6941.2006.00147.x

Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Watt, Lynsey C., Rinna, Joachim ORCID: https://orcid.org/0000-0001-9358-8453, Fry, John Christopher, Evershed, Richard P., Parkes, Ronald John and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2006. A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries. Environmental Microbiology 8 (9) , pp. 1575-1589. 10.1111/j.1462-2920.2006.01048.x
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Horsfield, B., Schenk, H. J., Zink, K., Ondrak, R., Dieckmann, V., Kallmeyer, J., Mangelsdorf, K., di Primlo, R., Wilkes, H., Parkes, Ronald John, Fry, John Christopher and Cragg, Barry Andrew 2006. Living microbial ecosystems within the active zone of catagenesis: Implications for feeding the deep biosphere. Earth and Planetary Science Letters 246 (1-2) , pp. 55-69. 10.1016/j.epsl.2006.03.040

Ashelford, Kevin E, Chuzhanova, Nadia, Fry, John Christopher, Jones, Antonia Jane and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2005. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Applied and Environmental Microbiology 71 (12) , pp. 7724-7736. 10.1128/AEM.71.12.7724-7736.2005

Parkes, Ronald John, Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry Andrew, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Newberry, Carole Janice, Ferdelman, Timothy G., Kallmeyer, Jens, Jorgensen, Bo B., Aiello, Ivano W. and Fry, John Christopher 2005. Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature 436 (7049) , pp. 390-394. 10.1038/nature03796
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Banning, Natasha C., Brock, Fiona, Fry, John Christopher, Parkes, Ronald John, Hornibrook, Edward R. C. and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2005. Investigation of the methanogen population structure and activity in a brackish lake sediment. Environmental Microbiology 7 (7) , pp. 947-960. 10.1111/j.1462-2920.2004.00766.x

Cotter-Howells, Janet, Charnock, John M., Winters, Carole, Kille, Peter ORCID: https://orcid.org/0000-0001-6023-5221, Fry, John Christopher and Morgan, Andrew John 2005. Metal compartmentation and speciation in a soil sentinel:  the earthworm, Dendrodrilus rubidus. Environmental Science & Technology 39 (19) , pp. 7731-7740. 10.1021/es050648h

Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Parkes, Ronald John, Fry, John Christopher and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 2004. Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments. Applied and Environmental Microbiology 70 (9) , pp. 5708-5713. 10.1128/AEM.70.9.5708-5713.2004

Newberry, Carole J., Webster, Gordon ORCID: https://orcid.org/0000-0002-9530-7835, Cragg, Barry Andrew, Parkes, Ronald John, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher 2004. Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190. Environmental Microbiology 6 (3) , pp. 274-287. 10.1111/j.1462-2920.2004.00568.x
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Ellis, Richard John, Morgan, Philip, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher 2003. Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Applied and Environmental Microbiology 69 (6) , pp. 3223-3230. 10.1128/AEM.69.6.3223-3230.2003

O'Sullivan, Louise Anne, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, John Christopher 2002. New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Applied and environmental microbiology 68 (1) , pp. 201-210. 10.1128/AEM.68.1.201-210.2002

Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Cragg, Barry Andrew, Parkes, Ronald John and Fry, John Christopher 2001. Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis. FEMS Microbiology Ecology 34 (3) , pp. 221-228. 10.1111/j.1574-6941.2001.tb00773.x

Ashelford, Kevin E. ORCID: https://orcid.org/0000-0003-3217-2811, Fry, John C., Day, Martin J., Hill, Katja E. ORCID: https://orcid.org/0000-0002-8590-0117, Learner, Michael A., Marchesi, Julian R. ORCID: https://orcid.org/0000-0002-7994-5239, Perkins, Caroline D. and Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 1997. Using microcosms to study gene transfer in aquatic habitats. FEMS Microbiology Ecology 23 (2) , pp. 81-94. 10.1111/j.1574-6941.1997.tb00393.x

Bale, S. J., Goodman, K., Rochelle, Paul A., Marchesi, Julian Roberto ORCID: https://orcid.org/0000-0002-7994-5239, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Parkes, Ronald John 1997. Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea. International Journal of Systematic Bacteriology 47 (2) , pp. 515-521. 10.1099/00207713-47-2-515

Hill, Katja E. ORCID: https://orcid.org/0000-0002-8590-0117, Marchesi, Julian R. ORCID: https://orcid.org/0000-0002-7994-5239 and Fry, John C.. 1996. Conjugation in the epilithon. Akkermans, Antoon D. L., Van Elsas, Jan Dirk and de Bruijn, Frans J., eds. Molecular Microbial Ecology Manual, Kluwer Academic Publishers, Dortrecht, The Netherlands, pp. 125-152. (10.1007/978-94-009-0215-2_9)

Parkes, Ronald John, Cragg, Barry Andrew, Bale, S. J., Goodman, K. and Fry, John Christopher 1995. A combined ecological and physiological approach to studying sulphate reduction within deep marine sediment layers. Journal of Microbiological Methods 23 (2) , pp. 235-249. 10.1016/0167-7012(95)00036-K

Hill, Katja E. ORCID: https://orcid.org/0000-0002-8590-0117, Fry, J. C., Weightman, A. J. ORCID: https://orcid.org/0000-0002-6671-2209, Day, M. J., Bradley, D. J. and Cousland, B. 1995. Retrotransfer of IncP1-like plasmids from aquatic bacteria. Letters in Applied Microbiology 20 (5) , pp. 317-322. 10.1111/j.1472-765X.1995.tb00454.x

Cragg, Barry Andrew, Parkes, Ronald John, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Maxwell, J. R., Kastner, M., Hovland, M., Whiticar, M. J., Sample, J. C. and Stein, R. 1995. Bacterial Profiles in Deep Sediments of the Santa Barbara Basin, Site 893. Proceedings of the Ocean Drilling Program Scientific Results 146-2 , pp. 139-144. 10.2973/odp.proc.sr.146-2.302.1995

Cragg, Barry Andrew, Parkes, Ronald John, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209, Rochelle, Paul A., Maxwell, James R., Kastner, Miriam, Hovland, M., Whiticar, Michael J. and Sample, James C. 1995. The Impact of Fluid and Gas Venting on Bacterial Populations and Processes in Sediments from the Cascadia Margin Accretionary System (Sites 888-892) and the Geochemical Consequences. Proceedings of the Ocean Drilling Program Scientific Results 146-1 , pp. 399-411. 10.2973/odp.proc.sr.146-1.241.1995

Parkes, Ronald John, Cragg, Barry Andrew, Bale, S. J., Getlifff, J. M., Goodman, K., Rochelle, Paul Anthony, Fry, John Christopher, Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 and Harvey, S. M. 1994. Deep bacterial biosphere in Pacific Ocean sediments. Nature 371 (6496) , pp. 410-413. 10.1038/371410a0

Hill, Katja E. ORCID: https://orcid.org/0000-0002-8590-0117, Fry, John C. and Weightman, Andrew J. ORCID: https://orcid.org/0000-0002-6671-2209 1994. Gene transfer in the aquatic environment: persistence and mobilization of the catabolic recombinant plasmid pD10 in the epilithon. Microbiology 140 (7) , pp. 1555-1563. 10.1099/13500872-140-7-1555

Rochelle, Paul A., Cragg, Barry Andrew, Fry, John Christopher, Parkes, Ronald John and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 1994. Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis. FEMS Microbiology Ecology 15 (1-2) , pp. 215-225. 10.1111/j.1574-6941.1994.tb00245.x

Parkes, Ronald John, Cragg, Barry Andrew, Getliff, J. M., Harvey, S. M., Fry, John Christopher, Lewis, C. A. and Rowland, S. J. 1993. A quantitative study of microbial decomposition of biopolymers in Recent sediments from the Peru Margin. Marine Geology 113 (1-2) , pp. 55-66. 10.1016/0025-3227(93)90149-P

Hill, K. E. ORCID: https://orcid.org/0000-0002-8590-0117, Weightman, A. J. ORCID: https://orcid.org/0000-0002-6671-2209 and Fry, J. C. 1992. Isolation and screening of plasmids from the epilithon which mobilize recombinant plasmid pD10. Applied and Environmental Microbiology 58 , pp. 1292-1300.

Getliff, J. M., Fry, John Christopher, Cragg, Barry Andrew and Parkes, Ronald John 1992. The potential for bacteria growth in deep sediment layers of the Japan Sea, Hole 798B-Leg 128. Proceedings of the Ocean Drilling Program Scientific Results 127/8 (1) , pp. 755-760. 10.2973/odp.proc.sr.127128-1.183.1992

Rochelle, Paul A., Fry, John Christopher, Parkes, Ronald and Weightman, Andrew John ORCID: https://orcid.org/0000-0002-6671-2209 1992. DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities. FEMS Microbiology Letters 100 (1-3) , pp. 59-65. 10.1111/j.1574-6968.1992.tb14019.x

Cragg, Barry Andrew, Harvey, S. M., Fry, John Christopher, Herbert, R. A. and Parkes, Ronald John 1992. Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B. Proceedings of the Ocean Drilling Program Scientific Results 127/8 (1) , pp. 761-776. 10.2973/odp.proc.sr.127128-1.184.1992

Cragg, Barry Andrew, Parkes, Ronald John, Fry, John Christopher, Herbert, R. A., Wimpenny, Julian W. T. and Getliff, J. M. 1990. Bacterial biomass and activity profiles within deep sediment layers. Proceedings of the Ocean Drilling Program Scientific Results 112 , pp. 607-619. 10.2973/odp.proc.sr.112.161.1990

Parkes, Ronald John, Cragg, Barry Andrew, Fry, John Christopher, Herbert, R. A., Wimpenny, J. W. T., Allen, J. A. and Whitfield, M. 1990. Bacterial biomass and activity in deep sediment layers from the Peru Margin [and discussion]. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 331 (1616) , pp. 139-153. 10.1098/rsta.1990.0061

Lloyd, D. ORCID: https://orcid.org/0000-0002-5656-0571, Edwards, S. W. and Fry, J. C. 1982. Temperature-compensated oscillations in respiration and cellular protein content in synchronous cultures of Acanthamoeba castellanii. Proceedings of the National Academy of Sciences of the United States of America 79 (12) , pp. 3785-3788. 10.1073/pnas.79.12.3785

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