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Genomic variations define divergence of water/wildlife-associated Campylobacter jejuniniche specialists from common clonal complexes

Ashelford, Kevin E., Hepworth, Philip J., Hinds, Jason, Gould, Katherine A., Witney, Adam A., Williams, Nicola J., Leatherbarrow, Howard, French, Nigel P., Birtles, Richard J., Mendonca, Chriselle, Dorrell, Nick, Wren, Brendan W., Wigley, Paul, Hall, Neil and Winstanley, Craig 2011. Genomic variations define divergence of water/wildlife-associated Campylobacter jejuniniche specialists from common clonal complexes. Environmental Microbiology 13 (6) , pp. 1549-1560. 10.1111/j.1462-2920.2011.02461.x

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Abstract

Although the major food-borne pathogen Campylobacter jejuni has been isolated from diverse animal, human and environmental sources, our knowledge of genomic diversity in C. jejuni is based exclusively on human or human food-chain-associated isolates. Studies employing multilocus sequence typing have indicated that some clonal complexes are more commonly associated with particular sources. Using comparative genomic hybridization on a collection of 80 isolates representing diverse sources and clonal complexes, we identified a separate clade comprising a group of water/wildlife isolates of C. jejuni with multilocus sequence types uncharacteristic of human food-chain-associated isolates. By genome sequencing one representative of this diverse group (C. jejuni 1336), and a representative of the bank-vole niche specialist ST-3704 (C. jejuni 414), we identified deletions of genomic regions normally carried by human food-chain-associated C. jejuni. Several of the deleted regions included genes implicated in chicken colonization or in virulence. Novel genomic insertions contributing to the accessory genomes of strains 1336 and 414 were identified. Comparative analysis using PCR assays indicated that novel regions were common but not ubiquitous among the water/wildlife group of isolates, indicating further genomic diversity among this group, whereas all ST-3704 isolates carried the same novel accessory regions. While strain 1336 was able to colonize chicks, strain 414 was not, suggesting that regions specifically absent from the genome of strain 414 may play an important role in this common route of Campylobacter infection of humans. We suggest that the genomic divergence observed constitutes evidence of adaptation leading to niche specialization.

Item Type: Article
Date Type: Publication
Status: Published
Schools: Medicine
Subjects: Q Science > QH Natural history > QH426 Genetics
Q Science > QR Microbiology
R Medicine > R Medicine (General)
Publisher: Society for Applied Microbiology and Blackwell Publishing
ISSN: 1462-2912
Funders: Department for Environment, Food and Rural Affairs, Higher Education Funding Council for England, Wellcome Trust
Date of Acceptance: 8 February 2011
Last Modified: 05 Jun 2017 05:24
URI: http://orca-mwe.cf.ac.uk/id/eprint/86709

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